The agricultural research institutes in provincial capitals are the important factors in regional agricultural technology innovation. Based on the summary of their innovative practice and experiences, this paper generalizes the innovation strategies in the period of reformation and transformation. The organic system is transforming from professional division to integrated combination so as to form innovative abiligy; the subject orientation is transforming from similar research to characteristic difference so as to advance competiveness; the service style is transforming from providing achievements to multiple plan so as to extend influences and the system transformation is changing from single institute to institute-enterprise interaction, in order to activate vitality.